PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G06180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 269aa    MW: 30965 Da    PI: 10.9184
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G06180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-092254337
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                      W+++E  ++++a +++G++ Wk++++ +g g+++
  OMERI01G06180.1 22 QWSKDELMRFYEAYRRHGKN-WKKVSASVG-GKSA 54
                     6*****************99.*********.9997 PP

2Myb_DNA-binding29.41.8e-09168200337
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                       W+++E  ++++a +++G++ Wk++++ +g g+++
  OMERI01G06180.1 168 QWSKDELMRFYEAYRRHGKN-WKKVSASVG-GKSA 200
                      6*****************99.*********.9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512935.354110IPR017884SANT domain
PROSITE profilePS5129311.7261869IPR017884SANT domain
SMARTSM007170.0261967IPR001005SANT/Myb domain
SuperFamilySSF466892.92E-92165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-42258IPR009057Homeodomain-like
PfamPF002495.9E-82255IPR001005SANT/Myb domain
CDDcd001672.95E-42354No hitNo description
PROSITE profilePS5129311.726164215IPR017884SANT domain
SMARTSM007170.026165213IPR001005SANT/Myb domain
SuperFamilySSF466892.92E-9167211IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-4168204IPR009057Homeodomain-like
PfamPF002495.9E-8168201IPR001005SANT/Myb domain
CDDcd001672.95E-4169200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MFLILWLGIR NSKRKMSDLG PQWSKDELMR FYEAYRRHGK NWKKVSASVG GKSADTVEAL  60
YSVHRDESKS HKGSDQTVRA SGKVRKREAT GQKEKEAPHA HRSYHERRTS GLSSFKKRYY  120
GDKGDPKPLV HLEGMILHRL TEGRKALQLR DPNKGSKLKR KMSDLGPQWS KDELMRFYEA  180
YRRHGKNWKK VSASVGGKSA DTVEALYSVH RDESKSHKGS DQTVRASGKV RKREATGQKE  240
KEAPHAHRSY HERRTSGLSS FKKRYYGGH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0644727e-90AK064472.1 Oryza sativa Japonica Group cDNA clone:002-110-H06, full insert sequence.
GenBankAP0025377e-90AP002537.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0001B06.
GenBankAP0027467e-90AP002746.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671B11.
GenBankAP0149577e-90AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126097e-90CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619153.13e-63PREDICTED: protein ALWAYS EARLY 2 isoform X2
TrEMBLA0A0E0BYJ00.0A0A0E0BYJ0_9ORYZ; Uncharacterized protein
STRINGBGIOSGA002937-PA7e-63(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-15DNA binding